How Long Does it Take the Gut to Repair after Gluten Exposure?
September 27, 2012 in FAQ, FAQ, Featured Posts, Gut Health
This is a very relevant question for those who are just embarking on their gluten-free journey. But, it’s also extremely important for anyone who has been following a paleo/primal/gluten-free diet for a while, but has been inadvertently exposed to gluten. It sometimes feels as though the longer we avoid gluten, the more sick we feel after accidentally eating some. This is in large part because the body stops protecting itself from gluten (for example, there may be less mucus in the gut) so when we do consume some, we are defenseless. It may also be because we forget how we used to feel and are so used to feeling so much healthier. Whether you are new to paleo or have been eating this way for a while, a common question is: how long does it take the gut to heal after gluten exposure?
I have talked about the irritation, inflammation and damage to the lining of the small intestine that can be caused gluten (I promise I will go back and add references to this post soon) and I have mentioned that it can take up to 6 months for the body to fully heal after a single gluten exposure. After delving into the research more thoroughly, I have discovered that this statement is simultaneously a gross understatement and an overstatement. Just like the extent of damage that gluten causes varies from individual to individual (see this post for a little bit more on variability in tolerance), so does the length of time it takes to recover. And it’s not as simple as the more damage you have, the longer it takes to recover. There are factors that control how sensitive you are (genetics, overall health, diet, stress, nutritional-deficiencies, gut microflora) and there are factors that affect how quickly you heal (okay, it’s the same list of factors, but it’s more complicated than A+B=C).
The cells that line the gut, called enterocytes or gut epithelial cells are organized into hills and valleys (to help maximize the surface area of the gut), forming finger-like columns of cells called villi separated by valleys called crypts. The enterocytes are constantly regenerating themselves (a pool or resident stem cells supplies the new enterocytes). As the cells age, they migrate higher up the villi and are eventually shed into the gut to be redigested (yes, we are constantly cannibalizing ourselves). This is called the “turnover” of the gut epithelium. In the normal healthy gut, the enterocytes migrate to the top of the villi in in 1-4 days, meaning that all of the villi cells are replaced with new cells every 3-5 days (this gets slower as we age) 1,2,3. The cells that migrate toward the bottom of the crypts have a longer lifespan of 2-3 weeks. What does this mean? A healthy person has an entirely new intestinal lining every 2-3 weeks.
Repairing the intestine following injury (whether that is caused by ingested toxins, infection, or some other injury) is a more involved and complex process that is tightly regulated and controlled by the body (for a detailed understanding of this process, see reference 4). The healing time varies depending on the extent of injury and studies trying to understand the role of the resident stem cells of the gut show that repair of the crypt and villi structure of the intestinal wall after injury can take anywhere from 2 to 12 weeks (depending on whether the stem cells themselves are injured) in the absence of confounding factors 4,5.
What does this mean? For healthy individuals without celiac disease or gluten sensitivity (where their bodies are producing antibodies against gluten), the damage to individual cells and the junctions between them that can be caused by gluten is relatively fast to heal, anywhere from a few days to 3 weeks. For these healthy individuals, most of this time is likely asymptomatic. Many people report symptoms that only last from a couple of hours to a couple of days after gluten exposure. This also means that healthy individuals should be able to heal their guts completely after following a 30-day paleo challenge such as a Whole30.
For those with confounding factors, healing is slower. Confounding factors are numerous and include gluten sensitivity (where the body is producing antibodies against gluten which increases inflammation and slows healing), celiac disease (an autoimmune condition), uncontrolled inflammation in the gut (which could be caused by food allergies, food sensitivities or diseases such as Inflammatory Bowel Disease), nutritional deficiencies (which can be caused by having a very inflamed and damaged gut, but slows healing because not all of the raw materials needed to repair are available), gut dysbiosis (the wrong type, amount and/or location of microorganisms in the gut), infections, stress, body-wide inflammation, and chronically elevated insulin.
How much do these confounding factors slow healing? The extreme end of the spectrum is those with Celiac Disease, an autoimmune condition triggered by gluten exposure. One hallmark of Celiac Disease is a shortening or blunting of the intestinal villi which is observed by performing a biopsy of the small intestine (they are typically 3-5 times longer in healthy individuals than those with Celiac Disease). For those with celiac disease, one study showed that only 66% of patients had a normal intestinal biopsy after 5 years on a gluten-free diet 6. This means that even after 5 years, 34% of Celiac Disease sufferers had not recovered. There are no good similar studies evaluating intestinal repair in people with non-celiac gluten-sensitivity, but medical professionals who specialize in treating gluten-sensitivity report time frames of approximately 1½-2 years 7.
It’s probably worth mentioning here that current reports suggest that both Celiac Disease and gluten-sensitivity are ridiculously underdiagnosed. It is estimated that 1 in every 100 Americans suffer from Celiac Disease but only 5% are ever diagnosed 8. This means that there is something like 2.5-3 million Americans with celiac disease that have no idea that they have it (when you extrapolate this statistic globally, it’s even scarier!). Gluten intolerance is estimated to affect 15-20% of the population 9. The take home message here? Even if you have never been diagnosed with celiac disease or gluten intolerance, you may have one of these conditions which could be contributing to slowed intestinal repair after switching to a paleo diet or after accidental gluten exposure.
How much gluten can cause a problem? This is highly individual. For those with Celiac disease (whether confirmed or undiagnosed), even a minute amount of gluten can cause significant damage to the small intestine in the majority of sufferers 10. Interestingly, a not unsubstantial percentage of these people (22%) will have significant damage to their small intestine but not suffer any gastrointestinal symptoms. For healthy individuals, the threshold amount to suffer symptoms is highly variable. Unfortunately, you don’t know until you test it on yourself.
So, how long does it take the gut to repair after gluten exposure? Once again, like so many topics I cover on this blog, the answer is “it depends”. For healthy individuals, healing likely takes only a couple of weeks. For those with celiac disease (and perhaps autoimmune diseases in general), fully healing the lining of the small intestine may take years. The rest of us can be anywhere in between.
1 Creamer B et al. “The turnover and shedding of epithelial cells–Part I The turnover in the gastro-intestinal tract”. Gut 1961 2: 110-116
2 Lipkin M et al. “Cell Proliferation Kinetics In The Gastrointestinal Tract Of Man. I. Cell Renewal In Colon And Rectum” J Clin Invest. 1963 June; 42(6): 767–776.
3 Godlewski MM et al “Into the Unknown–The Death Pathways in the Neonatal Gut Epithelium” Current Pediatric Reviews. 2011. 7(4):337-345
5 Booth C and Potten CS “Gut instincts: thoughts on intestinal epithelial stem cells” J Clin Invest. 2000;105(11):1493–1499.
6 Rubio-Tapia A “Mucosal recovery and mortality in adults with celiac disease after treatment with a gluten-free diet.” Am J Gastroenterol. 2010 Jun;105(6):1412-20.
7 http://glutendoctors.blogspot.com/2010/04/healing-time-after-removing-gluten.html
8 Lohi S et al. “Increasing prevalence of coeliac disease over time.” Aliment Pharmacol Ther. 2007 Nov 1;26(9):1217-25.
10 Lähdeaho ML et al. “Small- bowel mucosal changes and antibody responses after low- and moderate-dose gluten challenge in celiac disease.” BMC Gastroenterol. 2011 Nov 24;11:129.





































Thank you! I was just having this conversation this morning at the coffee shop!
Excellent post. I’d been looking for something like this as I kept reading anything from 1 month to 6 months. I’ve got a gluten intolerant son (who had skin and behavioral issues) and the changes in him after 8 months gluten free (about 4-5 months Paleo) have been amazing. But there are some lingering issues and I’m almost glad to hear that we may not see full benefits for another year.
Thank you! Almost all of my posts are topics that I research for my own interest (I’m usually interested because it impacts my own health or my family’s) and it always amazes me when that information is so hard to find (which this was).
Thank you for this very interesting post. I have celiac disease and even a minute amount can leave me physically sick for days…I didn’t realise how long it was really taking my body to heal. I have been following the Paleo Autoimmune protocol for about a month and feel better than I have in years. My next challenge will be to spend five weeks travelling in the USA and eating Paleo(we live in Australia).
Oh lordy, that could be a real challenge depending on where you’ll be! You could try locating farmers markets (food and culture in one!) – perhaps the city council would be able to give you dates and locations. Or there’s Eat Wild.com (I think?)
I live in Europe now but whenever I go home to Canada I’m hit again with how hard it is to find real food there, and what a challenge my family is up against to just find yogurt that’s JUST YOGURT. No wonder American real foodies come off as kooks who make their own everything – you can’t buy it so you HAVE to make it if you want to eat it. And that’s just speaking of groceries. God forbid you want to eat out!
Sorry; end of rant. Have a great trip!
Where in Canada are you visiting? I live in the west and also have friends on the coast. We have no trouble at all finding good paleo food. Perhaps they don’t know where to shop?
[...] Sarah’s post on How Long Does it Take the Gut to Repair after Gluten Exposure? [...]
Thank you for the post. I am in the category of what you refer to above as a healthy individual. However, I have MS and have removed gluten and most other grains and dairy (still working on the entire conversion as I was just dx and am totally overwhelmed!), so I do not consider myself “healthy”. I have been struggling to find a dietitian or ND that has any idea of how to answer these questions. I am asymptomatic when gluten gets into my system, but I continue to research the effect of gluten on autoimmunity as a whole and there does seem to be connections between gluten and MS. There just seems to be no one out there researching it to any extent. In any case, I am rambling, and I just wanted to say thank you for giving me an idea of how long the gluten will stay in my system if I am contaminated.
Great post. I’ve had a strange relationship with gluten over the last ten years. I slowly developed gluten intolerance. I had multiple blood tests for celiac which all came back negative. It was a nutritionist that finally told me to just leave gluten out of my diet for two weeks and see if I felt better. (I was really sick at the time.) This confirmed a fairly severe intolerance to anything gluten: brain fog, severe stomach/intestinal cramps, severe exhaustion. I would have symptoms almost immediately after eating anything containing gluten. I went GF for six years. When I first went GF there weren’t any products on the market and if I wanted anything I had to make it from scratch. As GF products came on the market I started finding substitutes for granola, cereals, breads, muffins and various other baked goods. However, I still had some GI symptoms and I finally realized that a lot of the newer GF treats were neither organic nor GMO free. So last fall I did the Paleo Whole 30 (but kept in milk since I had tested fine for dairy). Now I seem to be able to eat small amounts of regular wheat products with little ill effect. However if I have a pasta dinner I do get some GI distress so I know I’m not completely healed yet. For the past year I’ve combined the ideas of Paleo, Primal and GAPS (a gut healing protocol) and seem to be doing quite well on it. I think just going GF isn’t enough. The GF bakery treats contain nasty ingredients and are not a good substitute for real food and a Primal/Paleo diet.
I agree. Even some of the new paleo baking include ingredients which are gut irritants. You have to have encyclopedic knowledge of all of these things to be able to avoid them. Unfortunately, it’s still best to make your own.
[...] 4, 2012 in FAQ, The Autoimmune Protocol, The WHYs of the AIP For those 20% of us with celiac disease or gluten-intolerance/sensitivity (whether diagnosed or not), it is critical to understand the concept of gluten cross-reactivity. [...]
I just want to know how long it takes for the lining of my gut to heal from celiac disease. I have been very strict Paleo since my diagnosis, over a yr ago! They say it takes 10 years to heal. But come on now, I eat so healthy, it can’t be nearly that long. Just wish they had a study out there so I’d know for sure! Well the long term complications I have are low blood sugar, and allergies. But thats it, thankfully.
It can take 5-10 years to heal completely (some think that the gut never fully heals in celiacs), but that doesn’t mean that you can’t get it healed to the point of being completely asymptomatic much, much faster than that (like in a few months)
[...] View. I tackled some very fun and controversial topics for some posts (pros and cons of coffee, how long it takes the gut to heal, gluten cross-reactivity). I have amassed a large amount of information about paleo modifications [...]
I have been gluten free/Paleo since August 4. During that time I have had gluten only twice. Each time I have burning and pain in my stomach EVERY time I eat something (even if it’s perfect Paleo) beginning a day or two after the gluten exposure and lasting for 2-3 days. Does this sound like irritation to the stomach lining or something else? I am convinced it’s related to the gluten, but it seems like most people have reactions quickly instead of a day or two later so I’m confused… Help?
Actually, the reactions to gluten can be highly variable, immediate or delayed (or both), and some people don’t even get any GI symptoms. It really depends on how you are sensitive, what health issues you have etc. from what you are describing, my guess is that you have some gall bladder inflammation (possibly liver or pancreas too, but I think gall gladder is ore likely) induced by gluten (known to be very common in celiac disease, no one has studied it in non-celiac gluten intolerance). The burning sensation would be from the irritation to the gall bladder when it empties when you eat (location wise, it would feel very similar). Another possibility is a peptic ulcer (which they now know can be caused by gluten intolerance too). So yes, even thought your symptoms aren’t what many people report, it totally sounds like its explainable by gluten exposure.
Thanks! As a carb/bread addict for years, those days of pain have surely cured me of my addiction!
Thank you for the post! I am curious if you feel that there are useful ways to heal after an exposure? I am not diagnosed officially with celiac or gluten sensitivity, but after 15 years of awful constipation decided to go gluten free, I have had great success for about six months. I also went paleo a few months ago as I have RA and want to do what I can to fight it naturally. Inadvertently I ate some gluten a few weeks ago, which backed me up for a week, and included intense colon pain for the last five days of that week. What’s left behind, it feels like, is a wound in my colon. I had already been taking probiotics but I got a more complete one, and am watching what I eat very carefully. The pain continues a few hours before I go, though its no where near as bad as it was that week. Do you feel that any supplements can speed up the healing process?
Sounds like you are doing everything right by keeping your diet super clean. Broth or a collagen supplement might help speed healing. And sleep–as much as you possibly can.
Thank you for these suggestions. I haven’t been using either up to this point so its definitely worth a try.
I would love to know your thoughts on a supplement called zinc L-carnosine with regard to helping heal the GI tract. It thickens the mucosal barrier and helps to heal hPylori infections. Has anyone tried this? There is a good amount of literature available regarding zinc L-carnosine on Pubmed.org. We tried it, along with probiotics and inulin fiber, for my son after he had months of non-stop gut pain which was idiopathic. Within about two weeks, he was healed. Not sure which of the things we tried were responsible for the “cure”, but I have to think the zinc supplement was a major part of it.
Zinc supplementation is definitely valuable for people with unresolved inflammation and autoimmune disease. I’m not familiar with that particular supplement so I can’t really comment on it in particular.
May I reprint this post in my celiac disease support group newsletter? I would give you and your blog site full credit and no changes would be made. Thanks for your consideration! Betty Barfield, Branch Manager, Gluten Intolerance Group of North Texas, http://www.northtexasgig.com
As long as there is full credit and the link to my blog, that’s okay with me.
Thank you for this valuable information. I’ve been hypothyroid for about 8 years and last summer was diagnosed with Hashimoto’s Disease (both thyroid antibody tests were off the chart!). I also had a food sensitivity test done which showed very high antibodies to wheat and gluten, among six other things. Admittedly, I occasionally cheat and feel the affects anywhere from immediately to days (foggy, digestion issues, great fatigue, nausea). I totally lost control and went on a gluten “free-for-all” at a get-together with friends yesterday. I was up all night with diarrhea and feel absolutely awful today!! I MUST come to terms with my auto-immune disease and stop killing my poor body!! So, I was wondering how much damage I may have been doing and how long it might take to recover. I usually start feeling better in a few days but obviously repeated assaults like this just continue to damage my cells. I realize everyone is different but this gives me a great perspective on just how long it takes to heal…and I realize my cheating hasn’t allowed my body to heal probably at all. This is my wake-up call. Thank you!
Has anyone had any experience with IFlora probiotics? We are just now starting to try them.
I haven’t but my naturopathic doctor recommended Florigen3 and it’s been working well for me.
When you first start the AI protocol and remove everything including the nsaids will your body take time to understand you are doing this for the better ? I have RA and only use aleeve OTC and I am now removing all the nasty list from my diet but im finding Im just abit stiffer and a bit achey (no nsaids) I really want to keep going!! You inspire me!!!
There can be a bit of a delay. Specifically for RA, try a collagen supplement (I like Great Lakes collagen) and eat a ton of fish or add a fish oil supplement (fresh fish would be better). Hang in there!
Thank you so much ! I cant wait for your book I have pre ordered it !
Sue, I have also found a supplement called Zyflammend very helpful. It is combination of several herbs with anti-inflammatory properties. With that, and with paleo, I have been off all RA meds for about five months. Still a tiny bit of inflammation but no more than I ever had while taking the meds. I am going to look into the collagen too!
Thanks Sarah! I actually picked up a bottle of that last week. And I just ordered the collagen. I have never taken meds and I hope I never have to. Im glad you are off your meds. I have been eating this way or somewhat because I fall off the wagon alot when I feel to deprived or when I feel it makes no difference. But I did the 30 days no sugar now I will do the AI protocol and see if I can hopefully add eggs (since I just got chickens!) and nuts back into my diet!
Dear Paleo Mom,
Wanting to heal from gluten, and severe candida overgrowth. I was a human ginnie pig for my doctors for 30 years, abusing antibiotics. I had no idea that it would be so abusive to myself. Assuming that western medicine had all the answers. Now I know better and have worked with nutritionist to basically be paleo for several years. I find the sweets creep in and I binge probably because the candida. I have IBS and progressed to IC which is to my understanding, could all be related to the severe gut irritation for such a prolonged period. GI doctors gave me psylliac daily which just about killed me. I had so many problems from antibiotics, I developed C-difficile which doctors fought with stronger and longer antibiotics! At this point, after years of eating well, I have come to a good place although still have to fine tune. It has been suggested to my that Nystatin (anti-fungal) be used to help get off the Elmiron for IC. I also read from another post here on your sight, Zyflamend might be helpful as an anti-inflammatory. I take good doses of vitamins which are very helpful, Magnesium, Calcium, multi, fish oil, D, Bcomplex, and of course my probiotic (which I alternate often).